The following options are available during conversion:
Select Combine Files to combine files that were originally in different formats into one, single document.
This option is available when you select a folder, or several individual files, for conversion. Move documents in the list up or down to set the order in which you want the documents to be combined.
Convert Files in Subfolders
Select Convert files in subfolders to recursively convert all of the documents and subfolders in a selected folder.
The existing subfolder structure is created in the destination folder.
Overwrite Existing Files in the Destination Folder
If the destination folder already contains files with the same name as the ones you want to convert, you have two options. Select to overwrite existing files to replace already existing files with freshly converted ones. Clear the option to skip processing files of the same name.